I have FBackup set to start when windows starts but is there any way to have it start minimized to the system tray instead of having to manually clicking hide every time I start my computer
Here is a tip that might partially help you until the feature is implemented.
I assume you have the Fbackup shortcut icon on your desktop. If so, right click on it and select Properties. Under the tab called Shortcut, Change the value for "Run" from "Normal window" to "Minimized" and click ok.
When the program executes, the program will be minimized above the "Start" button.